Package: SeuratObject
Title: Data Structures for Single Cell Data
Version: 5.3.0
Authors@R: c(
  person(given = 'Paul', family = 'Hoffman', email = 'hoff0792@alumni.umn.edu', role = 'aut', comment = c(ORCID = '0000-0002-7693-8957')),
  person(given = 'Rahul', family = 'Satija', email = 'seurat@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0001-9448-8833')),
  person(given = 'David', family = 'Collins', email = 'dcollins@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9243-7821')),
  person(given = "Yuhan", family = "Hao", email = 'yhao@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-1810-0822')),
  person(given = "Austin", family = "Hartman", email = 'ahartman@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-7278-1852')),
  person(given = "Gesmira", family = "Molla", email = 'gmolla@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-8628-5056')),
  person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')),
  person(given = 'Tim', family = 'Stuart', email = 'tstuart@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-3044-0897')),
  person(given = "Madeline", family = "Kowalski", email = "mkowalski@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0002-5655-7620")),
  person(given = "Saket", family = "Choudhary", email = "schoudhary@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-5202-7633")),
  person(given = "Skylar", family = "Li", email = "sli@nygenome.org", role = "ctb"),
  person(given = "Longda", family = "Jiang", email = "ljiang@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0003-4964-6497")),
  person(given = "Anagha", family = "Shenoy", email = "ashenoy@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0002-0537-6862")),
  person(given = 'Jeff', family = 'Farrell', email = 'jfarrell@g.harvard.edu', role = 'ctb'),
  person(given = 'Shiwei', family = 'Zheng', email = 'szheng@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-6682-6743')),
  person(given = 'Christoph', family = 'Hafemeister', email = 'chafemeister@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-6365-8254')),
  person(given = 'Patrick', family = 'Roelli', email = 'proelli@nygenome.org', role = 'ctb')
  )
Description: 
  Defines S4 classes for single-cell genomic data and associated
  information, such as dimensionality reduction embeddings, nearest-neighbor
  graphs, and spatially-resolved coordinates. Provides data access methods and
  R-native hooks to ensure the Seurat object is familiar to other R users. See
  Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
  Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
  and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
  Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
  Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
  more details.
License: MIT + file LICENSE
URL: https://satijalab.github.io/seurat-object/,
        https://github.com/satijalab/seurat-object
BugReports: https://github.com/satijalab/seurat-object/issues
Additional_repositories: https://bnprks.r-universe.dev
Depends: R (>= 4.1.0), sp (>= 1.5.0)
Imports: future, future.apply, generics, grDevices, grid, lifecycle,
        Matrix (>= 1.6.4), methods, progressr, Rcpp (>= 1.0.5), rlang
        (>= 0.4.7), spam, stats, tools, utils
Suggests: BPCells, DelayedArray, fs (>= 1.5.2), sf (>= 1.0.0), ggplot2,
        HDF5Array, rmarkdown, testthat
LinkingTo: Rcpp, RcppEigen
Config/Needs/website: pkgdown
BuildManual: true
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Collate: 'RcppExports.R' 'zzz.R' 'generics.R' 'keymixin.R' 'graph.R'
        'default.R' 'assay.R' 'logmap.R' 'layers.R' 'assay5.R'
        'centroids.R' 'command.R' 'compliance.R' 'data.R' 'jackstraw.R'
        'dimreduc.R' 'segmentation.R' 'molecules.R' 'spatial.R' 'fov.R'
        'neighbor.R' 'seurat.R' 'sparse.R' 'utils.R'
NeedsCompilation: yes
Packaged: 2025-12-11 16:32:27 UTC; root
Author: Paul Hoffman [aut] (ORCID: <https://orcid.org/0000-0002-7693-8957>),
  Rahul Satija [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9448-8833>),
  David Collins [aut] (ORCID: <https://orcid.org/0000-0001-9243-7821>),
  Yuhan Hao [aut] (ORCID: <https://orcid.org/0000-0002-1810-0822>),
  Austin Hartman [aut] (ORCID: <https://orcid.org/0000-0001-7278-1852>),
  Gesmira Molla [aut] (ORCID: <https://orcid.org/0000-0002-8628-5056>),
  Andrew Butler [aut] (ORCID: <https://orcid.org/0000-0003-3608-0463>),
  Tim Stuart [aut] (ORCID: <https://orcid.org/0000-0002-3044-0897>),
  Madeline Kowalski [ctb] (ORCID:
    <https://orcid.org/0000-0002-5655-7620>),
  Saket Choudhary [ctb] (ORCID: <https://orcid.org/0000-0001-5202-7633>),
  Skylar Li [ctb],
  Longda Jiang [ctb] (ORCID: <https://orcid.org/0000-0003-4964-6497>),
  Anagha Shenoy [ctb] (ORCID: <https://orcid.org/0000-0002-0537-6862>),
  Jeff Farrell [ctb],
  Shiwei Zheng [ctb] (ORCID: <https://orcid.org/0000-0001-6682-6743>),
  Christoph Hafemeister [ctb] (ORCID:
    <https://orcid.org/0000-0001-6365-8254>),
  Patrick Roelli [ctb]
Maintainer: Rahul Satija <seurat@nygenome.org>
Repository: CRAN
Date/Publication: 2025-12-12 15:50:17 UTC
